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update LocalPrefixSpan impl #1

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mengxr
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@mengxr mengxr commented Jul 15, 2015

@feynmanliang I made some changes to to simplify LocalPrefixSpan. If it looks good to you, you can merge it and the changes will show up in your PR.

*/
private def getFreqItemAndCounts(
minCount: Long,
database: Array[Array[Int]]): Iterable[(Int, Long)] = {
database.flatMap(_.distinct)
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This will create an Array[Array[Int]] object, while we only need to scan through it one by one.

feynmanliang added a commit that referenced this pull request Jul 15, 2015
update LocalPrefixSpan impl
@feynmanliang feynmanliang merged commit 59db2f5 into feynmanliang:SPARK-8997-improve-prefixspan Jul 15, 2015
feynmanliang pushed a commit that referenced this pull request Jul 16, 2015
Improves the performance of LocalPrefixSpan by implementing optimizations proposed in [SPARK-8997](https://issues.apache.org/jira/browse/SPARK-8997)

Author: Feynman Liang <[email protected]>
Author: Feynman Liang <[email protected]>
Author: Xiangrui Meng <[email protected]>

Closes apache#7360 from feynmanliang/SPARK-8997-improve-prefixspan and squashes the following commits:

59db2f5 [Feynman Liang] Merge pull request #1 from mengxr/SPARK-8997
91e4357 [Xiangrui Meng] update LocalPrefixSpan impl
9212256 [Feynman Liang] MengXR code review comments
f055d82 [Feynman Liang] Fix failing scalatest
2e00cba [Feynman Liang] Depth first projections
70b93e3 [Feynman Liang] Performance improvements in LocalPrefixSpan, fix tests
feynmanliang pushed a commit that referenced this pull request Jul 21, 2015
This makes sure attempts are listed in the order they were executed, and that the
app's state matches the state of the most current attempt.

Author: Joshi <[email protected]>
Author: Rekha Joshi <[email protected]>

Closes apache#7253 from rekhajoshm/SPARK-8593 and squashes the following commits:

874dd80 [Joshi] History Server: updated order for multiple attempts(logcleaner)
716e0b1 [Joshi] History Server: updated order for multiple attempts(descending start time works everytime)
548c753 [Joshi] History Server: updated order for multiple attempts(descending start time works everytime)
83306a8 [Joshi] History Server: updated order for multiple attempts(descending start time)
b0fc922 [Joshi] History Server: updated order for multiple attempts(updated comment)
cc0fda7 [Joshi] History Server: updated order for multiple attempts(updated test)
304cb0b [Joshi] History Server: updated order for multiple attempts(reverted HistoryPage)
85024e8 [Joshi] History Server: updated order for multiple attempts
a41ac4b [Joshi] History Server: updated order for multiple attempts
ab65fa1 [Joshi] History Server: some attempt completed to work with showIncomplete
0be142d [Rekha Joshi] Merge pull request apache#3 from apache/master
106fd8e [Rekha Joshi] Merge pull request apache#2 from apache/master
e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
feynmanliang pushed a commit that referenced this pull request Jul 21, 2015
Implement IntArrayParam in mllib

Author: Rekha Joshi <[email protected]>
Author: Joshi <[email protected]>

Closes apache#7481 from rekhajoshm/SPARK-9118 and squashes the following commits:

d3b1766 [Joshi] Implement IntArrayParam
0be142d [Rekha Joshi] Merge pull request apache#3 from apache/master
106fd8e [Rekha Joshi] Merge pull request apache#2 from apache/master
e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
feynmanliang pushed a commit that referenced this pull request Jul 21, 2015
Modifying Vector, DenseVector, and SparseVector to implement argmax functionality. This work is to set the stage for changes to be done in Spark-7423.

Author: George Dittmar <[email protected]>
Author: George <[email protected]>
Author: dittmarg <[email protected]>
Author: Xiangrui Meng <[email protected]>

Closes apache#6112 from GeorgeDittmar/SPARK-7422 and squashes the following commits:

3e0a939 [George Dittmar] Merge pull request #1 from mengxr/SPARK-7422
127dec5 [Xiangrui Meng] update argmax impl
2ea6a55 [George Dittmar] Added MimaExcludes for Vectors.argmax
98058f4 [George Dittmar] Merge branch 'master' of github.com:apache/spark into SPARK-7422
5fd9380 [George Dittmar] fixing style check error
42341fb [George Dittmar] refactoring arg max check to better handle zero values
b22af46 [George Dittmar] Fixing spaces between commas in unit test
f2eba2f [George Dittmar] Cleaning up unit tests to be fewer lines
aa330e3 [George Dittmar] Fixing some last if else spacing issues
ac53c55 [George Dittmar] changing dense vector argmax unit test to be one line call vs 2
d5b5423 [George Dittmar] Fixing code style and updating if logic on when to check for zero values
ee1a85a [George Dittmar] Cleaning up unit tests a bit and modifying a few cases
3ee8711 [George Dittmar] Fixing corner case issue with zeros in the active values of the sparse vector. Updated unit tests
b1f059f [George Dittmar] Added comment before we start arg max calculation. Updated unit tests to cover corner cases
f21dcce [George Dittmar] commit
af17981 [dittmarg] Initial work fixing bug that was made clear in pr
eeda560 [George] Fixing SparseVector argmax function to ignore zero values while doing the calculation.
4526acc [George] Merge branch 'master' of github.com:apache/spark into SPARK-7422
df9538a [George] Added argmax to sparse vector and added unit test
3cffed4 [George] Adding unit tests for argmax functions for Dense and Sparse vectors
04677af [George] initial work on adding argmax to Vector and SparseVector
feynmanliang pushed a commit that referenced this pull request Jul 21, 2015
…mands

This will allow problems with piped commands to be detected.
This will also allow tasks to be retried where errors are rare (such as network problems in piped commands).

Author: Scott Taylor <[email protected]>

Closes apache#6262 from megatron-me-uk/patch-2 and squashes the following commits:

04ae1d5 [Scott Taylor] Remove spurious empty line
98fa101 [Scott Taylor] fix blank line style error
574b564 [Scott Taylor] Merge pull request apache#2 from megatron-me-uk/patch-4
0c1e762 [Scott Taylor] Update rdd pipe method for checkCode
ab9a2e1 [Scott Taylor] Update rdd pipe tests for checkCode
eb4801c [Scott Taylor] fix fail_condition
b0ac3a4 [Scott Taylor] Merge pull request #1 from megatron-me-uk/megatron-me-uk-patch-1
a307d13 [Scott Taylor] update rdd tests to test pipe modes
34fcdc3 [Scott Taylor] add optional argument 'mode' for rdd.pipe
a0c0161 [Scott Taylor] fix generator issue
8a9ef9c [Scott Taylor] make check_return_code an iterator
0486ae3 [Scott Taylor] style fixes
8ed89a6 [Scott Taylor] Chain generators to prevent potential deadlock
4153b02 [Scott Taylor] fix list.sort returns None
491d3fc [Scott Taylor] Pass a function handle to assertRaises
3344a21 [Scott Taylor] wrap assertRaises with QuietTest
3ab8c7a [Scott Taylor] remove whitespace for style
cc1a73d [Scott Taylor] fix style issues in pipe test
8db4073 [Scott Taylor] Add a test for rdd pipe functions
1b3dc4e [Scott Taylor] fix missing space around operator style
0974f98 [Scott Taylor] add space between words in multiline string
45f4977 [Scott Taylor] fix line too long style error
5745d85 [Scott Taylor] Remove space to fix style
f552d49 [Scott Taylor] Catch non-zero exit from pipe commands
feynmanliang pushed a commit that referenced this pull request Jul 30, 2015
[Spark-8998]Collect Enough Prefixes Improvements
feynmanliang pushed a commit that referenced this pull request Jul 30, 2015
…ected databases

Continuation of work by zhangjiajin

Closes apache#7412

Author: zhangjiajin <[email protected]>
Author: Feynman Liang <[email protected]>
Author: zhang jiajin <[email protected]>

Closes apache#7783 from feynmanliang/SPARK-8998-improve-distributed and squashes the following commits:

a61943d [Feynman Liang] Collect small patterns to local
4ddf479 [Feynman Liang] Parallelize freqItemCounts
ad23aa9 [zhang jiajin] Merge pull request #1 from feynmanliang/SPARK-8998-collectBeforeLocal
87fa021 [Feynman Liang] Improve extend prefix readability
c2caa5c [Feynman Liang] Readability improvements and comments
1235cfc [Feynman Liang] Use Iterable[Array[_]] over Array[Array[_]] for database
da0091b [Feynman Liang] Use lists for prefixes to reuse data
cb2a4fc [Feynman Liang] Inline code for readability
01c9ae9 [Feynman Liang] Add getters
6e149fa [Feynman Liang] Fix splitPrefixSuffixPairs
64271b3 [zhangjiajin] Modified codes according to comments.
d2250b7 [zhangjiajin] remove minPatternsBeforeLocalProcessing, add maxSuffixesBeforeLocalProcessing.
b07e20c [zhangjiajin] Merge branch 'master' of https://github.com/apache/spark into CollectEnoughPrefixes
095aa3a [zhangjiajin] Modified the code according to the review comments.
baa2885 [zhangjiajin] Modified the code according to the review comments.
6560c69 [zhangjiajin] Add feature: Collect enough frequent prefixes before projection in PrefixeSpan
a8fde87 [zhangjiajin] Merge branch 'master' of https://github.com/apache/spark
4dd1c8a [zhangjiajin] initialize file before rebase.
078d410 [zhangjiajin] fix a scala style error.
22b0ef4 [zhangjiajin] Add feature: Collect enough frequent prefixes before projection in PrefixSpan.
ca9c4c8 [zhangjiajin] Modified the code according to the review comments.
574e56c [zhangjiajin] Add new object LocalPrefixSpan, and do some optimization.
ba5df34 [zhangjiajin] Fix a Scala style error.
4c60fb3 [zhangjiajin] Fix some Scala style errors.
1dd33ad [zhangjiajin] Modified the code according to the review comments.
89bc368 [zhangjiajin] Fixed a Scala style error.
a2eb14c [zhang jiajin] Delete PrefixspanSuite.scala
951fd42 [zhang jiajin] Delete Prefixspan.scala
575995f [zhangjiajin] Modified the code according to the review comments.
91fd7e6 [zhangjiajin] Add new algorithm PrefixSpan and test file.
feynmanliang pushed a commit that referenced this pull request Aug 12, 2015
This PR is based on apache#4229, thanks prabeesh.

Closes apache#4229

Author: Prabeesh K <[email protected]>
Author: zsxwing <[email protected]>
Author: prabs <[email protected]>
Author: Prabeesh K <[email protected]>

Closes apache#7833 from zsxwing/pr4229 and squashes the following commits:

9570bec [zsxwing] Fix the variable name and check null in finally
4a9c79e [zsxwing] Fix pom.xml indentation
abf5f18 [zsxwing] Merge branch 'master' into pr4229
935615c [zsxwing] Fix the flaky MQTT tests
47278c5 [zsxwing] Include the project class files
478f844 [zsxwing] Add unpack
5f8a1d4 [zsxwing] Make the maven build generate the test jar for Python MQTT tests
734db99 [zsxwing] Merge branch 'master' into pr4229
126608a [Prabeesh K] address the comments
b90b709 [Prabeesh K] Merge pull request #1 from zsxwing/pr4229
d07f454 [zsxwing] Register StreamingListerner before starting StreamingContext; Revert unncessary changes; fix the python unit test
a6747cb [Prabeesh K] wait for starting the receiver before publishing data
87fc677 [Prabeesh K] address the comments:
97244ec [zsxwing] Make sbt build the assembly test jar for streaming mqtt
80474d1 [Prabeesh K] fix
1f0cfe9 [Prabeesh K] python style fix
e1ee016 [Prabeesh K] scala style fix
a5a8f9f [Prabeesh K] added Python test
9767d82 [Prabeesh K] implemented Python-friendly class
a11968b [Prabeesh K] fixed python style
795ec27 [Prabeesh K] address comments
ee387ae [Prabeesh K] Fix assembly jar location of mqtt-assembly
3f4df12 [Prabeesh K] updated version
b34c3c1 [prabs] adress comments
3aa7fff [prabs] Added Python streaming mqtt word count example
b7d42ff [prabs] Mqtt streaming support in Python
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